ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

Visualizing the next generation of sequencing data with GenomeView .. .. A .. Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7), Michal Nánási ([email protected] ) Website: (free download, tutorials, manual, . Next generation sequencing presents new challenges in large scale data at the European Conference of Computational Biology (ECCB) , Ghent. Tutorials, workshops and seminars To do bioinformatics well, you need to learn 3 things. ECCB Next-gen sequencing Tutorial (Thomas [email protected]).

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Together, the Programme Committee PC was composed of reviewers and 35 co-reviewers. It offers participants an opportunity to learn about new areas of bioinformatics research, to get an introduction to important established topics, or to develop advanced skills in areas about which they are already familiar. Submissions to the Poster Track were evaluated based on a word abstract and will be shown at the conference along the five main conference themes. Flexible and interactive visualization of GFA sequence graphs.

Working with next-generation sequencing data Tutorial tuotrial Jan Aerts received his PhD at Wageningen University Netherlands in on the subject of chicken genome mapping and sequencing.

Following the call for Proceedings papers, we received submissions. On the scientific side, the Proceedings Track presents novel scientific contributions, while the Highlights Track showcases already published high-impact science in computational biology.

Next generation sequencing

The conference topics span all areas of methodological developments for computational biology and innovative applications of computational methods to molecular biology and biomedicine. Motivation In recent years, there has been a revolution in the area of DNA sequencing with the arrival of next-generation sequencing technologies.

In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some basic quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants from a reference sequence.

The type excb volume of the data produced by next-generation sequencing machines presents many previously unseen informatics challenges.

This year four different tracks were created for ECCB: In recent years, there has been a revolution in the area of DNA sequencing with the ecch of next-generation sequencing technologies.

It coordinates, integrates and sustains bioinformatics resources across its member states, enabling users in academia and industry to access vital data, tools, standards, compute and training services for research. Finally, the ELIXIR track proved to be a very popular addition, with 50 high-quality submissions for only 12 presentation slots.

We also thank, as our further supporting sponsors, Gemeentemuseum Den Haag, where also the opening reception will be held, the Municipality of The Hague, Bayer sponsoring the morning run and The Utrecht Bioinformatics Centre sponsoring the Poster Award.

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Oxford University Press is a department of the University of Oxford. As a consequence, databases and software are evolving rapidly, and new algorithms are required to improve computational analyses of massive biological or biomedical datasets. The 48 accepted papers are included in this special issue. The ECCB conferences are gathering about a thousand scientists and industry staff working at the intersection of a broad range of disciplines including computer science, mathematics, biology and medicine.

Gkoutos University of Birmingham, UK. After thorough consideration and discussion, the ECCB theme co- chairs selected 24 proposals out of 71 submissions, mainly on the criteria of compatibility with the ECCB objectives, wide impact in the life sciences and the potential for attracting a large audience to the conference. Submissions to this track should cross the boundaries of traditional academic science, or show developments that are directly relevant beyond academia or have potential for it.

The aim of this tutorial is to briefly introduce the key basic principles needed to understand what it means to represent information on the Semantic Web, and then to provide the attendees with basic hands on competences to start using biomedical information resources which are now available on this framework. At least sixteen exhibitor booths will be open throughout the conference in the central conference hall, which is well connected to the other activities at Tjtorial The type and sewuencing of the data produced by next-generation sequencing machines presents many previously unseen informatics challenges.

Presenters

The added focus on reproducibility resulted in many authors opting to make their methods open source. Taken together, the workshops demonstrate how extensively technologies have found their way into large-scale practical applications: We are grateful to the ECCB steering committee for their support and contribution to the organization of the conference. Close mobile search navigation Article navigation.

Sequuencing will be provided with an overview of existing resources databases, tools and methods for detecting cis-regulatory elements in genome sequences, and generate testable hypotheses about the binding specificity of transcription factors motifs discoverytheir precise binding locations binding site predictionand their target genes target identificationand go towards regulatory networks. We received more than eighty applications for travel fellowships from young scientists with an oral or poster presentation.

It is therefore important for all protein structure bioinformaticians to be able to evaluate the quality of the structures used in their studies and to know sequencong it might be beneficial to ask an NMR spectroscopist or X-ray crystallographer to help bring an old file up to today’s standards. The Application Track is an initiative to promote application of computational biology eccbb industry and other fields beyond academia. Many people contributed to the local organization of the conference, often much beyond the call of duty, and we owe them a great debt, in particular Femke Francissen and Jacintha van Beemen, both at the Dutch Techcentre for Life Sciences DTL for their relentless logistic and organizational support.

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In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some basic quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants from a reference sequence.

Next generation sequencing | Taverna

Ruben Kok Dutch Techcentre for Life Sciences had a decisive role in the Local Steering Committee, while Celia van Gelder is thanked once more for her support also in organisational matters.

Working with next-generation sequencing data – A short primer on QC, alignment, and variation analysis of next-generation sequencing data Presenters Thomas Keane completed his PhD degree in the area of distributed computing and high-throughput phylogenomics from NUI Maynooth Ireland in The 14 workshops preceding the ECCB main meeting were selected out of a total of 29 applications, showing how popular ECCB has become as a venue for dissemination of computational biology research.

Email alerts New issue alert. It is our pleasure to thank all the people and organizations that are making ECCB a successful and high-quality conference. A dedicated Education Poster Track was created to devote in-depth attention to education that is so crucial for the next generation of bioinformaticians.

Sign In or Create an Account. Sponsored Talks enable sponsors to showcase their innovations in computational biology and to highlight their scientific value. To present a more unified view of where the science has gone over recent years, new to ECCB this year is that the conference presentations are divided over five broad themes: They will be presenting the latest scientific literature in the field of computational biology, bioinformatics, data stewardship, modeling and simulation, as well as new hardware, software and technology developments.

The purpose of the ECCB tutorial program is to provide participants with lectures and hands-on training, covering topics relevant to the field of bioinformatics. We thank all those who provided financial support to the conference. Essentially, these efforts contribute to the success and reputation of the ECCB conference! Current methods and applications for regulatory sequence analysis Tutorial 4: Finally, all these efforts would be meaningless without the many participants from all over the world.

Working with next-generation sequencing data – A short primer on QC, alignment, and variation analysis of next-generation sequencing data.

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