Jmol is a free, open source molecule viewer for students, educators, and researchers in For the most up-to-date scripting documentation see the Jmol/ JSmol. Documentation of Jmol’s scripting language can be found here: http://chemapps. This is the official. JSmol is a fully functional implementation of Jmol that does not Various ways to create surfaces and more documentation on surfaces.
|Published (Last):||1 December 2010|
|PDF File Size:||1.3 Mb|
|ePub File Size:||9.81 Mb|
|Price:||Free* [*Free Regsitration Required]|
The recommended way to cite Jmol is: Includes atomic, van der Waals and ionic radii. Shaded images are calculated and cached, so performance should not be an issue except when dealing with very large protein molecules.
In addition to an extensive description of all commands and options, it provides excellent demonstrations and examples. Table of Contents Testing results. The applet is tested and working with Internet Explorer, Netscape, Opera, Mozilla and derivatives and Konqueror on various platforms.
Jmol Applet Documentation
Colors Used by Jmol This document specifies which colors Jmol uses for elements, chains, chain direction, charge, hydrogen documentatiion, isosurfaces, positional variability, residues, nucleotides, and secondary structure.
Web pages without writing code by using the Jmol “Export to Web” function. More dynamical and frequently updated than this web site! A short script included as an applet parameter which is executed as soon as the applet is loaded.
If you would like to have multiple instances of the applet on a single page then you should give them unique names. Supported Browsers Testing results 3. By default, documrntation are rendered with perspective depth. Scripting Scripting References Ways to integrate scripts.
To get things to run on an installed base of older Netscape and IE browsers you may want to consider looking for ‘old’ documentation rather documentwtion ‘up to date’ documentation. Renders atoms and bonds as shaded spheres and cylinders. The Jmol Applet Guide describes the Jmol applet.
Backward compatibility changes of behavior across versions Features added since version 10 Users mailing list and a mirror.
Jmol links Website Sourceforge. Unfortunately, the news is not good for Macintosh OS X.
Jmol – Research Computing Documentation
We recommend that you use the name ‘jmol’ as in:. Scripting for Jmol Scripting Documentation This interactive online documentation is the reference guide for all commands that form the Jmol scripting language. Jmol is an open-source viewer for three-dimensional chemical structures, with features for chemicals, crystals, materials and biomolecules.
These are official guides for Jmol. It also provides a testing and demonstration page. The JmolViewer can be integrated as a component into other Java applications. This documentation describes and compares the different options available in Jmol scripts for generating surfaces, either based on the molecule or geometric.
With some browser versions you can sneak by without starting object references with ‘document’. Verified Error on jmol-applet.
Running Jmol using Java Web Start.